Egon Willighagen @egonw@mastodon.social

second position in my group is now online! looking for someone to get serious with the @eNanoMapper ontology, working in/with/for the @NanoSolveIT and @nanocommons projects https://academictransfer.com/en/302634/phd-candidate-using-ontologies-to-build-a-knowledge-graph-for-molecular-interactions-of-nanoparticles-in-the-department-of-bioinformatics-school-nutrim-at-the-faculty-of-health-medicine-and-life-sciences/

we have a postdoc position to integrate biological, chemical, and toxicology resources with Docker, OpenAPI, to build a virtual human: https://academictransfer.com/en/302534/postdoctoral-researcher-in-bioinformaticscheminformatics-using-openapi-fair-and-docker-for-predictive-toxicology-and-risk-assessment-10-fte-faculty-of-health-medicine-and-life-sciencesschool-nutrimdepartment-of-bioinformatics-bigcat/
#VHP4Safety

Egon Willighagen is stepping down as Editor-in-Chief of the Journal of #Cheminformatics. The journal now being part of Springer Nature no longer allows for running the journal in the spirit of #OpenScience.
https://zenodo.org/record/4926031
https://www.reddit.com/r/Open_Science/comments/ny7ufc/egon_willighagen_is_stepping_down_as/?utm_source=ifttt

Please boost

Which #universities are on #Mastodon / Fediverse?
Welche #Universitäten sind im #Fediverse?

Official:
• @unihohenheim Uni #Hohenheim, #Germany
• @unijena Uni #Jena, Germany

Own server:
• https://mastodon.utwente.nl/about @utwente #UTwente, #Netherlands
• https://metu.life/about/ @Tuan #Metu, #Turkey
• https://mastodon.mit.edu/about @maxj @dukhovni #MIT, #USA
• https://mastodon.ocf.berkeley.edu/about @staff UC #Berkeley, USA

Students’ Committee:
• @astatu #AStA #TUBerlin #Berlin, Germany.

Any missing?

in the past week I have started annotating CAS registry numbers in #wikidata with references to indicate CAS Common Chemistry https://w.wiki/3AGr This, in turn, is starting to be used to validate the CAS numbers in the English Wikidata (I can reports for other langauges too, tho) #chemistry #openscience #AmericanChemicalSociety

Fwd: "CDK, OPSIN, BridgeDb in Python 3.7 with scyjava and Bacting" https://chem-bla-ics.blogspot.com/2021/04/cdk-opsin-bridgedb-in-python-37-with.html

updated CiTO in #wikidata statistics, by Scholia: https://scholia.toolforge.org/cito/

happy to have contributed to this new work (preprint): "Open Natural Products Research: Curation and Dissemination of Biological Occurrences of Chemical Structures through #Wikidata" https://www.biorxiv.org/content/10.1101/2021.02.28.433265v1

Fwd: "Atom resolution" https://chem-bla-ics.blogspot.com/2021/02/atom-resolution.html

new blog: "Cheminformatics and Open Peer Review" https://chem-bla-ics.blogspot.com/2021/02/cheminformatics-and-open-peer-review.html

new paper: "A protocol for adding knowledge to #Wikidata: aligning resources on human coronaviruses" https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-020-00940-y (blog will follow)

Fwd: "Journal of Chemical Information and Modeling introduces new editorial guidelines around Open Science" https://chem-bla-ics.blogspot.com/2020/12/journal-of-chemical-information-and.html

Fwd: "21 Tips on how to sound #openscience" https://chem-bla-ics.blogspot.com/2020/12/21-tips-on-how-to-sound-openscience.html

Fwd: "Bacting: Code coverage, JaCoCo, codecov.io, and API coverage" https://chem-bla-ics.blogspot.com/2020/12/bacting-code-coverage-jacoco-codecovio.html

"Semantic Annotation for Tabular Data", using knowledge graphs like #DBPedia and #Wikidata.

(Khurana and Galhotra, 2020)

https://arxiv.org/pdf/2012.08594.pdf

i wonder if there is a #wikidata tool that can tell me the complexity (ideally in terms of shannon entropy or something like that) of an item over time? I like to measure the growth of information in that entry, particular linkedness.