Thu, 13 Nov 2025 10:28:21 +0000
snakemake, bioinformatics, genomics

We’ve added a new Snakemake meta-wrapper for creating standalone variant reports:
🔗 https://snakemake-wrappers.readthedocs.io/en/stable/meta-wrappers/bio/alignoth_report.html
It combines Datavzrd for an interactive overview table with Alignoth for read pileup plots — all linked together in one portable HTML report.

Check out our demo hosted on GitHub pages: https://alignoth.github.io/alignoth-example-report/variants/index_1.html
Props to my colleague Felix who worked with me on this over the last few weeks in the @johanneskoester lab.