nf-core<p>Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!</p><p>Please see the changelog: <a href="https://github.com/nf-core/scnanoseq/releases/tag/1.1.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/scnanoseq/r</span><span class="invisible">eleases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/10xgenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>10xgenomics</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/scrnaseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>scrnaseq</span></a> <a href="https://mstdn.science/tags/singlecell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>singlecell</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
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#longreadsequencing
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nf-core<p>Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!</p><p>Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.3.1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/mag/release</span><span class="invisible">s/tag/3.3.1</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>assembly</span></a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>binning</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanoporesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!</p><p>Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.3.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/mag/release</span><span class="invisible">s/tag/3.3.0</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>assembly</span></a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>binning</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanoporesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Abish Stephen<p>Today was a special day. <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/LongReadSequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LongReadSequencing</span></a></p>
Boas Pucker<p>Excited to share the release of our Tropaeolum majus genome sequence and annotation:<br /><a href="https://doi.org/10.1101/2024.11.01.621629" target="_blank" rel="nofollow noopener" translate="no"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1101/2024.11.01.621</span><span class="invisible">629</span></a><br /><a href="https://mastodon.social/tags/Genomics" class="mention hashtag" rel="tag">#<span>Genomics</span></a> <a href="https://mastodon.social/tags/LongReadSequencing" class="mention hashtag" rel="tag">#<span>LongReadSequencing</span></a></p><p><span class="h-card" translate="no"><a href="https://genomic.social/@PuckerLab" class="u-url mention">@<span>PuckerLab</span></a></span> <span class="h-card" translate="no"><a href="https://wisskomm.social/@tubraunschweig" class="u-url mention">@<span>tubraunschweig</span></a></span></p>
nf-core<p>Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!</p><p>Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.2.1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/mag/release</span><span class="invisible">s/tag/3.2.1</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>assembly</span></a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>binning</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanoporesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!</p><p>Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.2.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/mag/release</span><span class="invisible">s/tag/3.2.0</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>assembly</span></a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>binning</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanoporesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Boas Pucker<p>Students learned all steps of a plant genome project including planning, DNA extraction, nanopore sequencing, genome sequence assembly, gene prediction, functional annotation, data submission, and final presentation.<br /><a href="https://mastodon.social/tags/Genomics" class="mention hashtag" rel="tag">#<span>Genomics</span></a> <a href="https://mastodon.social/tags/LongReadSequencing" class="mention hashtag" rel="tag">#<span>LongReadSequencing</span></a><br />(2/11)</p>
PuckerLab<p><span class="h-card"><a href="https://mstdn.science/@samnm" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>samnm</span></a></span> and Benneth completed their work on the Ceratophyllum submersum plastome sequence. The phylogenetic tree shows the relationship of this aquatic plant to other plant species<br><a href="https://doi.org/10.1186/s13104-023-06459-z" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1186/s13104-023-064</span><span class="invisible">59-z</span></a> <br><a href="https://genomic.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://genomic.social/tags/AquaticPlants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AquaticPlants</span></a> <a href="https://genomic.social/tags/LongReadSequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LongReadSequencing</span></a></p>
PuckerLab<p>Excited to share that Ronja just performed ONT sequencing run #100 in our lab. Read length distribution and output look great. Many thanks to Ronja and Katharina!<br>Read more about our genomics projects:<br><a href="https://www.tu-braunschweig.de/en/ifp/pbb/research/genome-sequencing-projects" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">tu-braunschweig.de/en/ifp/pbb/</span><span class="invisible">research/genome-sequencing-projects</span></a><br><a href="https://genomic.social/tags/LongReadSequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LongReadSequencing</span></a> <a href="https://genomic.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a></p>
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